PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g012470.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 179aa    MW: 20347.9 Da    PI: 3.7646
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g012470.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.5e-111633899
                    EEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3 38 ledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99
                    +ed++g  +W++k++y  +++s++yvl+ ++ +Fv+a+gL+ gDf++ +  ++ ++ ++v++++++
  Csa04g012470.2  1 MEDLDGrHVWTFKYRYwpNNNSRMYVLE-NTGDFVNAHGLQLGDFIMVY--QNlDSNNYVIQARKA 63
                    678888679*******89999999***9.*******************9..777888889888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-14167IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-14162No hitNo description
PROSITE profilePS508639.53164IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-11262IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-9263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEDLDGRHVW TFKYRYWPNN NSRMYVLENT GDFVNAHGLQ LGDFIMVYQN LDSNNYVIQA  60
RKASEEEGEE DVTMVEEDDV YTNLTKIENT VVNDLLIQDF NHQSSNSNNN KSSYYYPVID  120
DITTNTASFV YDTTALTSND TPLDYLGGST TTANNYYSDF GSFEGLGSVE NISLDDFY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304971e-164AJ630497.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g26790.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502623.11e-128PREDICTED: B3 domain-containing transcription factor FUS3-like
SwissprotQ9LW311e-101FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLD7LR961e-100D7LR96_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.5__447__AT3G26790.11e-99(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-86B3 family protein